Rough shiftng

I just recently replaced my engine on my 99 galant gtz 3.0. I got a used 3.0 out of a 05 Sebring every thing works but the transmission is not shifting right. The engine codes are po715 - input/turbine speed sensor a circuit , which I replaced the input speed sensor on the transmission. Also po340 - camshaft position sensor a circuit bank one or single sensor , and lastly po 335 - crankshaft position sensor a circuit. I had to Souter some wires on the distributor and still its shiftng roughly any ideas all help is greatly appreciated thx